in review

Bernot, J. P., Owen, C. L., Wolfe, J. M., Meland, K., Olesen, J., Crandall, K. A. Major revisions in pancrustacean phylogeny with recommendations for resolving challenging nodes. bioRxiv.


Hawdon, J. M. and Bernot, J. P. (2022). Teaching Parasitology Lab Remotely Using Livestreaming. The American Biology Teacher.

Bernot, J. P., Avdeyev, P., Zamyatin, A., Alexeev, N., Dreyer, N., Pérez-Losada, M., Crandall, K. A. (2022). Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle Pollicipes pollicipes. GigaScience.

Bernot J. P., Avdeyev, P., Zamyatin, A., Alexeev, N., Dreyer, N., Pérez-Losada, M., Crandall, K. A. (2022). Supporting data for “Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle Pollicipes pollicipes”. GigaScience Database.


Bernot, J. P., Boxshall, G. A., Crandall, K. A. (2021). A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism. PeerJ.

Haskins, I. N., Wang, B.-D., Bernot, J. P., Cauley, E. C., Horvath, A., Marks, J. H., Lee, N. H., Agarwal, S. (2021). Genomics of Black American Colon Cancer Disparities: An RNA-Seq Study from an Academic, Tertiary Referral Center. Surgery.


Bernot, J. P., Rudy, G., Erickson, P. T., Ratnappan, R., Haile, M., Rosa, B. A., Mitreva, M., O’Halloran, D. M., Hawdon, J. M. (2020). Transcriptomic analysis of hookworm Ancylostoma ceylanicum life cycle stages reveals changes in GPCR diversity associated with the onset of parasitism. International Journal for Parasitology.

Boxshall, G. A., Bernot, J. P., Barton, D. P., Diggles, B. K., Yong, R. Q.-Y., Atkinson-Coyle, T., Hutson, K. S. (2020). Parasitic copepods of the family Lernanthropidae Kabata, 1979 (Copepoda: Siphonostomatoida) from Australian fishes with descriptions of seven new species. Zootaxa.

Maynard, T., Horvath, A., Bernot, J. P., Karpinksi, B., Tavares, A. L. P., Zeng, A. S. Q., Spurr, L., Olender, J., Moody, S. A., Fraser, C. M., LaMantia, A. S., Lee, N. H. (2020). Transcriptional dysregulation in developing trigeminal sensory neurons in the LgDel mouse model of DiGeorge 22q11.2 Deletion Syndrome. Human Molecular Genetics.

Fujiogi, M., Camargo Jr., C. A., Bernot, J. P., Freishtat, R. J., Harmom, B., Mansbach, J. Castro-Nallar, E., Perez-Losada, M., Hasegawa, K. (2020). In infants with severe bronchiolitis: dual-transcriptomic profiling of nasopharyngeal microbiome and host response. Pediatric Research.


Bernot, J. P. and Caira, J. N. (2019). Site specificity and attachment mode of Symcallio and Calliobothrium species (Cestoda: “Tetraphyllidea”) in smoothhound sharks of the genus Mustelus (Carcharhiniformes: Triakidae). PeerJ

Bernot, J. P. and Boxshall, G. A. (2019). Two new species of parasitic copepods from the genera Nothobomolochus and Unicolax (Cyclopoida: Bomolochidae) from Australian waters. PeerJ


Hughes, L.C., Somoza, G.M., Nguyen, B.M., Bernot, J. P., González-Castro, M., Díaz de Astarloa, J.M., and Ortí, G. (2017). Transcriptomic differentiation underlying marine-to-freshwater transitions in the South American silversides Odontesthes argentinensis and O. bonariensis (Atheriniformes). Ecology and Evolution

Bernot, J. P. and Boxshall, G.A. (2017). A new species of Pseudopandarus Kirtisinghe, 1950 (Copepoda: Siphonostomatoida: Pandaridae) from sharks of the genus Squalus L. in New Caledonian waters. Systematic Parasitology 94: 275–291.


Bernot, J. P., Caira, J.N. and Pickering, M. (2016). Diversity, phylogenetic relationships, and host associations of Calliobothrium and Symcallio (Cestoda: “Tetraphyllidea”) parasitizing triakid sharks. Invertebrate Systematics 30: 616–634.


Bernot, J. P., Caira, J.N. and Pickering, M. (2015). The dismantling of Calliobothrium (Cestoda: Tetraphyllidea) with erection of Symcallio n. gen. and description of two new species. The Journal of Parasitology 101: 167–181.